Parameter

Position at Codon

First

Second

Third

Total

Thyrosine frequency

29.9%

42.2%

26.7%

306

Cytosine frequency

17.6%

21.6%

28.1%

306

Adenine frequency

25.8%

17.6%

42.7%

306

Guanine frequency

26.7%

18.6%

2.5%

306

Frequency of invariable sites

73%

Frequency of parsimony informative sites

27%

Nucleotide diversity (Pi)

0.069833

Number of haplotipes

9

Total number of mutations

97

Polymorphic sites

83

ts/tv ratio (k)

Purine = 5.253, Pyrimidine = 13.418

ts/tv ratio (R)

4.978

Gamma discrete distribution (Tamura-Nei Model)

0.1882

Mean of evolutionary rate

0.00, 0.01, 0.10, 0.63, dan 4.26 substitution per site